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Multiple sequence alignment
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#	Item
51	CSE 584A Class 18 Jeremy Buhler March 30, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-03-30 09:53:59 Computational phylogenetics Bioinformatics Dynamic programming FASTA BLAST SmithWaterman algorithm BLAT Matrix Regular expression Sequence Sequence alignment Multiple sequence alignment
52	IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 1 Learning Parameter-Advising Sets for Multiple Sequence Alignment Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2015-03-16 19:59:49 Estimation theory Estimator M-estimator Sequence alignment L-estimator
53	BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Vol. 28 no, pages 2685–2686 doi:bioinformatics/bts507 Add to Reading List Source URL: www.megasoftware.net Language: English - Date: 2016-01-11 15:52:39 Computational phylogenetics Bioinformatics Phylogenetic tree Multiple sequence alignment Sequence alignment Phylogenetics Mega Maximum parsimony Clustal FASTA MEGA Molecular Evolutionary Genetics Analysis
54	Kevin J. Liu Homepage: http://www.cse.msu.edu/~kjl Email: Office: Department of Computer Science & Engineering Add to Reading List Source URL: www.cse.msu.edu Language: English - Date: 2016-07-19 17:04:30 Computational phylogenetics Bioinformatics Phylogenetics Guggenheim Fellows Genomics Tandy Warnow Comparative genomics Sequence alignment Multiple sequence alignment Phylogenetic comparative methods Phylogenetic tree Phylo
55	Multiple Sequence Alignment and Phylogenetic Reconstruction: Theory and Methods in Biological Data Analysis Gianluca Della Vedova Add to Reading List Source URL: www.statistica.unimib.it Language: English - Date: 2004-04-21 05:50:41 Bioinformatics Computational phylogenetics Phylogenetics Combinatorics Dynamic programming Sequence alignment Multiple sequence alignment Phylo Homology Shortest common supersequence problem Longest common subsequence problem Alignment-free sequence analysis
56	Search Algorithms for Biosequences Using Random Projection Jeremy Buhler A dissertation submitted in partial fulfillment of the requirements for the degree of Add to Reading List Source URL: www.cse.wustl.edu Language: English - Date: 2001-08-28 13:13:57 Bioinformatics Computational phylogenetics Multiple sequence alignment Nucleic acid sequence PRINTS SmithWaterman algorithm
57	Genome Informatics 11: 141–Protein Sequence-Structure Alignment Based on Site-Alignment Probabilities Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2001-02-21 03:44:48 Bioinformatics Computational phylogenetics Sequence alignment BLOSUM Protein structure prediction Gap penalty Protein superfamily Threading SuperPose Statistical potential STING Multiple sequence alignment
58	Methods LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA Michael Brudno,1 Chuong B. Do,1 Gregory M. Cooper,2 Michael F. Kim,1 Add to Reading List Source URL: lagan.stanford.edu Language: English - Date: 2003-09-07 17:22:43 Bioinformatics Computational phylogenetics Multiple sequence alignment Sequence alignment BLAST BLAT Gap penalty NeedlemanWunsch algorithm Phylo T-Coffee BLOSUM VISTA
59	MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Koichiro Tamura,1,2 Daniel Peterson,2 Nicholas Peterson,2 Glen Stecher,2 Masatoshi Nei,3 and Add to Reading List Source URL: www.megasoftware.net Language: English - Date: 2016-01-11 15:52:39 Computational phylogenetics Phylogenetics Bioinformatics Sequence alignment Masatoshi Nei Multiple sequence alignment Substitution model Maximum parsimony Molecular clock Nucleic acid sequence Lineage Phylogenetic tree
60	1 Large-scale multiple sequence alignment and phylogeny estimation Tandy Warnow1,∗ 1 Department of Computer Science, University of Texas at Austin, Austin, Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2014-08-30 16:01:16 Computational phylogenetics Bioinformatics Phylogenetics Multiple sequence alignment Sequence alignment Protein methods Phylogenetic tree Structural alignment Maximum parsimony Homology Protein superfamily Clustal